are primary tissue layers the same as germ layers?

A germ layer is a collection of cells, formed during animal embryogenesis. Germ layers are only really pronounced in the vertebrates. However, all animals more complex than sponges (eumetazoans and agnotozoans) produce two or three primary tissue layers (sometimes called primary germ layers). Animals with radial symmetry, like cnidarians, produce two called ectoderm and endoderm, making them diploblastic. Animals with bilateral symmetry produce a third layer in-between called mesoderm, making them triploblastic. Germ layers will eventually give rise to all of an animal?s tissues and organs through a process called organogenesis.

Germ layers
 
Gastrulation of a diploblast: The formation of germ layers from a (1) blastula to a (2) gastrula. Some of the ectoderm cells (orange) move inward forming the endoderm (red).Caspar Friedrich Wolff observed organization of the early embryo in leaf-like layers. Later, Heinz Christian Pander discovered germ layers while studying chick embryos.

Among animals, sponges show the simplest organization, having a single germ layer. Although they have differentiated cells (e.g. collar cells), they lack true tissue coordination. Diploblastic animals, Cnidaria and ctenophores, show an increase in complexity, having two germ layers, the endoderm and ectoderm. Diploblastic animals are organized into recognisable tissues. All higher animals (from flatworms to man) are triploblastic, having in addition a mesoderm. Triploblastic animals develop recognisable organs.

Development
Fertilization leads to the formation of a zygote. During the next stage, cleavage, mitotic cell divisions transform the zygote into a tiny ball of cells called a blastula. This early embryonic form undergoes a massive reorganization called gastrulation forming a gastrula with either two or three layers (the germ layers). In all vertebrates, these are the forerunners of all adult tissues and organs.

The appearance of the archenteron marks the onset of gastrulation.

In humans, after about three days, the zygote has formed a solid mass of cells by mitotic division, called a morula. This then changes to a blastocyst, consisting of an outer layer called a trophoblast, and an inner cell mass called the embryoblast. Filled with uterine fluid, the blastocyst breaks out of the zona pellucida undergoes implantation. The inner cell mass initially has two layers: the hypoblast and epiblast. At the end of the second week, a primitive streak appears. The epiblast in this region moves towards the primitive streak, dive down into it, and form a new layer, called the endoderm, pushing the hypoblast out of the way (this goes on to form the amnion.) The epiblast keeps moving and forms a second layer, the mesoderm. The top layer is now called the ectoderm.

Endoderm
 
The endoderm produces tissue within the lungs, thyroid, and pancreas.Main article: Endoderm
The endoderm is one of the germ layers formed during animal embryogenesis. Cells migrating inward along the archenteron form the inner layer of the gastrula, which develops into the endoderm.

The endoderm consists at first of flattened cells, which subsequently become columnar. It forms the epithelial lining of the whole of the digestive tube excepting part of the mouth and pharynx and the terminal part of the rectum (which are lined by involutions of the ectoderm). The lining cells of all the glands which open into the digestive tube, including those of the liver and pancreas, the epithelium of the auditory tube and tympanic cavity, of the trachea, bronchi, and air cells of the lungs, of the urinary bladder and part of the urethra, and that which lines the follicles of the thyroid gland and thymus are also formed by this layer.

The endoderm forms: stomach, colon, liver, pancreas, urinary bladder; lining of urethra, epithelial parts of trachea, lungs, pharynx, thyroid, parathyroid, intestine.

Mesoderm
 
The mesoderm aids in the production of cardiac muscle, skeletal muscle, smooth muscle, tissues within the kidneys, and red blood cells.Main article: Mesoderm
The mesoderm germ layer forms in the embryos of animals more complex than cnidarians, making them triploblastic. During gastrulation, some of the cells migrating inward contribute to the mesoderm, an additional layer between the endoderm and the ectoderm.

This key innovation evolved hundreds of millions of years ago and led to the evolution of nearly all large, complex animals. The formation of a mesoderm led to the formation of a coelom. Organs formed inside a coelom can freely move, grow, and develop independently of the body wall while fluid cushions protect them from shocks.

The mesoderm forms: skeletal muscle, skeleton, dermis of skin, crystal lens of the eye, connective tissue, urogenital system, heart, blood (lymph cells), and spleen.

Ectoderm
 
The ectoderm produces tissues within the epidermis and aids in the formation of neurons within the brain, and melanocyt

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Yes, during embryogenesis the first mapping of cell fate is occurring. This is done by regulation in the cells making them different from one another. The word germ is used as source, or primary beginning point.

Descendants of the first germ cells will become the different types of tissue in the growing embryo. Once moved to the correct body location the cell lineage will express yet more controls to let the tissue join in becoming an organ.