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divijnanda divijnanda
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6 years ago
Describe, in general terms, the steps involved in the automated synthesis of the DNA sequence GCT.
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wrote...
6 years ago
Step 1
Attachment of 5'-DMT-N-benzoyl-2'-deoxyaguanosine to the polymer support by a 3' ester linkage.
Step 2
Deprotection of the 5'-hydroxyl by cleavage of the DMT ether with dichloroacetic acid in CH2CL2.
Step 3
Phosphite formation between the free 5'-hydroxyl of the polymer-bound N-protected 2'-deoxyguanosine and the phosphoramidite protected 5'-DMT-2'-deoxycytidine in the presence of tetrazole followed by oxidation to the phosphate triester with I2.
Step 4
Repeat step 2 to deprotect the 5'-hydroxyl of the polymer-GC.
Step 5
Repeat step 3 to form the phosphate triester between 5'-hydroxyl of 2'-deoxycytidine residue and phosphoramidite protected 5'-DMT-N-benzoyl-2'-deoxythymidine.
Step 6
Cleave all protecting groups from the heterocyclic bases from the phosphates, as well as cleave the ester bond holding the DNA to the silica by treatment with aqueous ammonia.
divijnanda Author
wrote...
6 years ago
Brilliant
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